PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g11220.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 930aa    MW: 102938 Da    PI: 6.8546
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g11220.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.51.6e-20355455199
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+kvl+ sd+++ grlvlpk +ae++  ++++ e++ l+++d +g++W++++++  +++s++yvl+ G     +a +L++gD+v+F++++  +++
  Vang03g11220.2 355 FEKVLSASDAGRIGRLVLPKACAEAYfpSISQSEGVPLRMQDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQAMQLRAGDTVTFSRID-PGGK 447
                     99**************************777789999***************9989999999***9.********************987.8998 PP

                     .EEEEE-S CS
              B3  92 lvvkvfrk 99 
                     lv++++r+
  Vang03g11220.2 448 LVMGFRRA 455
                     99999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-30351465IPR015300DNA-binding pseudobarrel domain
CDDcd100172.59E-24353454No hitNo description
SuperFamilySSF1019361.83E-20353454IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.5E-23355456IPR003340B3 DNA binding domain
PfamPF023621.8E-17355455IPR003340B3 DNA binding domain
PROSITE profilePS5086311.138355456IPR003340B3 DNA binding domain
PROSITE profilePS5105014.17617667IPR011124Zinc finger, CW-type
PfamPF074962.2E-10622664IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 930 aa     Download sequence    Send to blast
LSFGLYFFGS GILDFVLMGS DICVVNGSCT HEWRKGWLLR SGGFAQLCCK CGFMEEWKGD  60
IHEPLSAYEN SVFCSKFHHQ QTGWRECNFC NKPIHCGCMV SRSLFEHLDF GGIGCVSCVN  120
TSQLSTMRNI ENPNGPVSLK KNNSSDRPSR SEGRLFARGV DEGKLMQFCK IIEASESSRW  180
NNAQKDGTIS RHGHNNQEAK CSFGEGDIGF SNVVKPSVQS LTFATLENNR SPWEIKNIHE  240
ANVQPSLSMY LGNASGKNSV LPSAGEAVEG RLEGKTSPPF HQGQRSRPIF PKPVKSGLTM  300
NVEIDKGTIS QSRVARPPAD GRGKNQLLPR YWPRITDQEL ERLSGDLKST VVPLFEKVLS  360
ASDAGRIGRL VLPKACAEAY FPSISQSEGV PLRMQDVKGN EWTFQFRFWP NNNSRMYVLE  420
GVTPCIQAMQ LRAGDTVTFS RIDPGGKLVM GFRRASNSAD TQETSTSAQS NSAKGATSAG  480
TENLPSGSNN ANLLLSMKGN VETNFNGQRE HPLLATGTSG LLITETNGIM TNNTSLQRKV  540
SVSEKKKTRN IGPKSKRLLI DNEDARELKL TWEEAQDLLR PPPSVKPSIV TIEDQVFEEY  600
DEPPVFGKRT IFSTCSSGVK EQWAQCDDCS KWRKLPVDAL LPANWTCFDN AWDSRRCSCT  660
VPEELSSGEL ESLLKTDKDF KKRRSDEKSM SIQEHMASGL EALASAAALG DNLVDTAESS  720
AGATTKHPRH RPGCSCIVCI QPPSGKGRHK PTCACNVCLT VKRRFKTLML RKKKRQSERE  780
AEAAQKDQVL PKEESDTNET SRDDATQLEK EVVGLSRSQA EVGESSAAGQ IDLNSDPNRE  840
DMVVDLSAIF FCESDPTAEH EYMNQNDPRS YTNELQNGEN SSLHTPQSNG EGQRHFSDLR  900
SFASIMWNQE RRDEEDSEPN QNQNQNNLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-1635445813120DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1761772KRRFKTLMLRKK
2761774KRRFKTLMLRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014518887.10.0PREDICTED: B3 domain-containing transcription repressor VAL1-like isoform X1
RefseqXP_014518889.10.0PREDICTED: B3 domain-containing transcription repressor VAL1-like isoform X1
RefseqXP_014518890.10.0PREDICTED: B3 domain-containing transcription repressor VAL1-like isoform X1
RefseqXP_014518891.10.0PREDICTED: B3 domain-containing transcription repressor VAL1-like isoform X1
TrEMBLA0A0S3S5V70.0A0A0S3S5V7_PHAAN; Uncharacterized protein
STRINGGLYMA11G31234.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103233039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2